EnhancerDB
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  3. rs540629602[chr17:2860189]
Enhancers that have rs540629602[chr17:2860189]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2849745 2866995 enh4215
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs540629602[chr17:2860189]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2860182 2860196 PLAG1 JASPAR yes 52789657
chr17 2860188 2860199 E2F1 JASPAR yes 52789658
chr17 2860189 2860194 SP1 TRANSFAC yes 52789659
chr17 2860189 2860200 E2F4 JASPAR yes 52789660
chr17 2860189 2860200 E2F6 JASPAR yes 52789661
Genes associated with rs540629602[chr17:2860189], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More