EnhancerDB
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  3. rs540637962[chr1:185626334]
Enhancers that have rs540637962[chr1:185626334]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 185611645 185629075 enh12480
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs540637962[chr1:185626334]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 185626316 185626337 IRF1 JASPAR yes 33831742
chr1 185626326 185626346 RREB1 JASPAR yes 33831743
chr1 185626326 185626347 IRF1 JASPAR yes 33831744
chr1 185626327 185626342 FOXP1 JASPAR yes 33831747
chr1 185626329 185626349 RREB1 JASPAR yes 33831748
chr1 185626330 185626350 RREB1 JASPAR yes 33831749
chr1 185626333 185626339 TCF4 TRANSFAC yes 33831750
chr1 185626333 185626345 FOXI1 JASPAR yes 33831751
chr1 185626333 185626348 FOXP1 JASPAR yes 33831752
chr1 185626333 185626353 RREB1 JASPAR yes 33831753
chr1 185626334 185626354 RREB1 JASPAR yes 33831754
Genes associated with rs540637962[chr1:185626334], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More