EnhancerDB
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  3. rs540672271[chr1:155196985]
Enhancers that have rs540672271[chr1:155196985]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 155186185 155200282 enh647
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas Uterus Thymus Epithelial (MCF-7)
Transcript factors that have rs540672271[chr1:155196985]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 155191923 155197612 ZNF274 GTRD no Cervix (HeLa-S3) 21341379
chr1 155192407 155197777 ZNF274 GTRD no Cervix (HeLa-S3) 21341385
chr1 155196324 155197753 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341502
chr1 155196577 155197237 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341506
chr1 155196632 155197008 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21341507
chr1 155196671 155197044 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341508
chr1 155196742 155197052 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21341509
chr1 155196795 155196985 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21341510
chr1 155196818 155198784 ZNF143 GTRD no Epithelial (MCF-7) 21341511
chr1 155196828 155197432 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341512
chr1 155196831 155197121 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341513
chr1 155196836 155197846 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21341514
chr1 155196958 155197618 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341515
chr1 155196960 155197408 ZNF143 GTRD no Epithelial (MCF-7) 21341516
chr1 155196973 155196987 POU4F1 JASPAR yes 32337017
Genes associated with rs540672271[chr1:155196985], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More