EnhancerDB
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  3. rs540680422[chr16:87511017]
Enhancers that have rs540680422[chr16:87511017]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 87488525 87523615 enh16897
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540680422[chr16:87511017]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 87511005 87511018 NFKB1 JASPAR yes 12220461
chr16 87511005 87511018 NFKB2 JASPAR yes 12220462
chr16 87511005 87511025 TP53 JASPAR yes 12220463
chr16 87511006 87511017 NFKB1 JASPAR yes 12220464
chr16 87511007 87511017 NFKB1 JASPAR yes 12220466
chr16 87511011 87511022 TFAP2A JASPAR yes 12220467
chr16 87511011 87511022 TFAP2B JASPAR yes 12220468
chr16 87511011 87511022 TFAP2C JASPAR yes 12220469
chr16 87511012 87511021 TFAP2A JASPAR yes 12220470
chr16 87511017 87511021 LFA1 TRANSFAC yes 12220471
Genes associated with rs540680422[chr16:87511017], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More