EnhancerDB
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  3. rs540681221[chr1:55047130]
Enhancers that have rs540681221[chr1:55047130]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540681221[chr1:55047130]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55047123 55047138 TFAP2C JASPAR yes 28995321
chr1 55047125 55047140 TFAP2A JASPAR yes 28995322
chr1 55047126 55047137 TFAP2A JASPAR yes 28995323
chr1 55047126 55047137 TFAP2B JASPAR yes 28995324
chr1 55047127 55047136 TFAP2A JASPAR yes 28995325
Genes associated with rs540681221[chr1:55047130], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More