EnhancerDB
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  3. rs540690413[chr17:62998029]
Enhancers that have rs540690413[chr17:62998029]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540690413[chr17:62998029]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62997701 62998271 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21780989
chr17 62998017 62998031 SPIC JASPAR yes 55337834
chr17 62998023 62998044 IRF1 JASPAR yes 55337835
chr17 62998024 62998039 FOXP1 JASPAR yes 55337836
chr17 62998024 62998045 IRF1 JASPAR yes 55337837
chr17 62998025 62998046 IRF1 JASPAR yes 55337838
chr17 62998029 62998043 IRF7 JASPAR yes 55337839
chr17 62998029 62998050 IRF1 JASPAR yes 55337840
Genes associated with rs540690413[chr17:62998029], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More