EnhancerDB
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  3. rs540803859[chr1:209579662]
Enhancers that have rs540803859[chr1:209579662]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 209579567 209579719 vista4898
VISTA
Transcript factors that have rs540803859[chr1:209579662]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209579305 209579799 ZNF274 GTRD no Cervix (HeLa-S3) 21375281
chr1 209579305 209579799 ZNF274 GTRD no Cervix (HeLa-S3) 107865739
chr1 209579333 209579794 ZNF274 GTRD no Bone Marrow (K562) 107865740
chr1 209579360 209579732 ZNF274 GTRD no Bone Marrow (K562) 107865741
chr1 209579372 209579776 ZNF274 GTRD no Liver (HepG2) 107865742
chr1 209579412 209579761 ZNF274 GTRD no Liver (HepG2) 107865743
chr1 209579645 209579666 IRF1 JASPAR yes 34972344
chr1 209579645 209579666 IRF1 JASPAR yes 118448218
chr1 209579649 209579663 IRF8 JASPAR yes 34972346
chr1 209579649 209579663 IRF8 JASPAR yes 118448220
chr1 209579650 209579668 IRF2 JASPAR yes 34972347
chr1 209579650 209579668 IRF2 JASPAR yes 118448221
chr1 209579651 209579672 IRF1 JASPAR yes 34972348
chr1 209579651 209579672 IRF1 JASPAR yes 118448222
chr1 209579653 209579668 PRDM1 JASPAR yes 34972349
chr1 209579653 209579668 STAT2 JASPAR yes 34972350
chr1 209579653 209579668 PRDM1 JASPAR yes 118448223
chr1 209579653 209579668 STAT2 JASPAR yes 118448224
chr1 209579654 209579668 STAT1 JASPAR yes 34972351
chr1 209579654 209579668 STAT1 JASPAR yes 118448225
chr1 209579655 209579667 IRF1 JASPAR yes 34972352
chr1 209579655 209579667 IRF1 JASPAR yes 118448226
chr1 209579655 209579669 IRF7 JASPAR yes 34972353
chr1 209579655 209579669 IRF8 JASPAR yes 34972354
chr1 209579655 209579669 IRF7 JASPAR yes 118448227
chr1 209579655 209579669 IRF8 JASPAR yes 118448228
chr1 209579655 209579670 IRF9 JASPAR yes 34972355
chr1 209579655 209579670 IRF9 JASPAR yes 118448229
chr1 209579657 209579678 IRF1 JASPAR yes 34972356
chr1 209579657 209579678 IRF1 JASPAR yes 118448230
chr1 209579660 209579664 YY1 TRANSFAC yes 34972357
chr1 209579660 209579664 YY1 TRANSFAC yes 118448231
chr1 209579660 209579675 FOXP1 JASPAR yes 34972358
chr1 209579660 209579675 FOXP1 JASPAR yes 118448232
chr1 209579661 209579676 FOXP1 JASPAR yes 34972359
chr1 209579661 209579676 FOXP1 JASPAR yes 118448233
chr1 209579662 209579677 FOXP1 JASPAR yes 34972360
chr1 209579662 209579677 FOXP1 JASPAR yes 118448234
Genes associated with rs540803859[chr1:209579662], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More