EnhancerDB
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  3. rs540873320[chr12:122234935]
Enhancers that have rs540873320[chr12:122234935]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 122219767 122240055 enh2650
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs540873320[chr12:122234935]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 122229445 122242257 POLR2A UCSC Txn Factor no Conserved 108065674
chr12 122234932 122234947 FOXP1 JASPAR yes 124247732
chr12 122234933 122234948 FOXP1 JASPAR yes 124247733
chr12 122234934 122234949 FOXP1 JASPAR yes 124247734
chr12 122234934 122234955 IRF1 JASPAR yes 124247735
chr12 122234935 122234950 FOXP1 JASPAR yes 124247736
chr12 122234935 122234956 IRF1 JASPAR yes 124247737
Genes associated with rs540873320[chr12:122234935], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More