EnhancerDB
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  3. rs540946820[chr16:89387907]
Enhancers that have rs540946820[chr16:89387907]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 89371847 89409975 enh16905
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540946820[chr16:89387907]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 89387761 89388891 ZNF274 GTRD no Bone Marrow (K562) 21738168
chr16 89387761 89388891 ZNF274 GTRD no Bone Marrow (K562) 108225618
chr16 89387813 89388789 ZNF274 GTRD no Bone Marrow (K562) 21738169
chr16 89387813 89388789 ZNF274 GTRD no Bone Marrow (K562) 108225619
chr16 89387875 89388732 ZNF274 GTRD no Bone Marrow (K562) 21738170
chr16 89387875 89388732 ZNF274 GTRD no Bone Marrow (K562) 108225620
chr16 89387897 89387909 NHLH1 JASPAR yes 12330915
chr16 89387898 89387908 NHLH1 JASPAR yes 12330916
chr16 89387907 89387917 SP1 JASPAR yes 12330917
Genes associated with rs540946820[chr16:89387907], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More