EnhancerDB
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  3. rs541143690[chr16:11429249]
Enhancers that have rs541143690[chr16:11429249]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 11415474 11429815 enh3885
Astrocyte Blood (Karpas-422) Uterus Blood (T-cell) Stomach Kidney Epithelial (MCF-7) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Muscle (A673)
Transcript factors that have rs541143690[chr16:11429249]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 11429232 11429253 IRF1 JASPAR yes 9507075
chr16 11429236 11429250 IRF7 JASPAR yes 9507083
chr16 11429238 11429253 FOXP1 JASPAR yes 9507084
chr16 11429239 11429251 FOXC2 JASPAR yes 9507085
chr16 11429240 11429251 FOXC1 JASPAR yes 9507086
chr16 11429240 11429261 IRF1 JASPAR yes 9507087
chr16 11429242 11429257 FOXP1 JASPAR yes 9507089
chr16 11429247 11429268 IRF1 JASPAR yes 9507090
chr16 11429249 11429253 YY1 TRANSFAC yes 9507091
chr16 11429249 11429264 FOXP1 JASPAR yes 9507092
Genes associated with rs541143690[chr16:11429249], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More