EnhancerDB
  1. Home
  2. SNP
  3. rs541538266[chr1:229232092]
Enhancers that have rs541538266[chr1:229232092]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229225622 229286295 enh12760
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Ovary Esophagus Liver Blood (T-cell) Blood (OCI-LY7) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs541538266[chr1:229232092]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229228744 229232100 ZNF274 GTRD no Cervix (HeLa-S3) 21389898
chr1 229228744 229232100 ZNF274 GTRD no Cervix (HeLa-S3) 107877687
chr1 229228818 229232486 ZNF274 GTRD no Cervix (HeLa-S3) 21389900
chr1 229228818 229232486 ZNF274 GTRD no Cervix (HeLa-S3) 107877689
chr1 229228877 229232149 ZBTB33 GTRD no Lung (A549) 107877698
chr1 229228881 229232191 ZBTB33 GTRD no Lung (A549) 107877700
chr1 229228986 229232108 ZNF274 GTRD no Cervix (HeLa-S3) 21389915
chr1 229228986 229232108 ZNF274 GTRD no Cervix (HeLa-S3) 107877710
chr1 229231356 229232339 ZNF143 GTRD no Epithelial (MCF-7) 21390004
chr1 229231357 229232445 ZNF274 GTRD no Cervix (HeLa-S3) 21390005
chr1 229231416 229232324 ZNF143 GTRD no Epithelial (MCF-7) 21390006
chr1 229231554 229232260 ZNF274 GTRD no Liver (HepG2) 21390011
chr1 229231616 229232190 ZNF143 GTRD no Epithelial (MCF-7) 21390012
chr1 229231665 229232162 ZNF143 GTRD no Epithelial (MCF-7) 21390014
chr1 229231680 229232097 ZNF274 GTRD no Liver (HepG2) 21390015
chr1 229231685 229232117 ZNF143 GTRD no Epithelial (MCF-7) 21390016
chr1 229231772 229232208 ZNF143 GTRD no Epithelial (MCF-7) 21390017
chr1 229231774 229232129 ZNF274 GTRD no Cervix (HeLa-S3) 21390018
chr1 229231778 229232276 ZNF143 GTRD no Epithelial (MCF-7) 21390019
chr1 229231804 229232155 ZNF143 GTRD no Epithelial (MCF-7) 21390020
chr1 229231824 229232209 ZNF143 GTRD no Epithelial (MCF-7) 21390021
chr1 229232081 229232092 DMRT3 JASPAR yes 35959770
chr1 229232090 229232096 SOX10 JASPAR yes 35959772
Genes associated with rs541538266[chr1:229232092], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More