EnhancerDB
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  3. rs541554612[chr1:117267806]
Enhancers that have rs541554612[chr1:117267806]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117246825 117269613 enh43034
Skin (Keratinocyte) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Blood (OCI-LY7) Stomach Muscle (A673) Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs541554612[chr1:117267806]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117266324 117270021 ZNF143 GTRD no Epithelial (MCF-7) 21333623
chr1 117266729 117270155 ZNF143 GTRD no Epithelial (MCF-7) 21333624
chr1 117266936 117270864 ZNF143 GTRD no Epithelial (MCF-7) 21333625
chr1 117267308 117270533 ZNF143 GTRD no Epithelial (MCF-7) 21333627
chr1 117267412 117270692 ZNF143 GTRD no Epithelial (MCF-7) 21333628
chr1 117267517 117270289 ZNF143 GTRD no Epithelial (MCF-7) 21333629
chr1 117267524 117269641 ZNF143 GTRD no Epithelial (MCF-7) 21333630
chr1 117267647 117270660 ZNF143 GTRD no Epithelial (MCF-7) 21333631
chr1 117267743 117269638 ZNF143 GTRD no Epithelial (MCF-7) 21333632
chr1 117267769 117269546 ZNF143 GTRD no Epithelial (MCF-7) 21333633
chr1 117267801 117267821 PPARG JASPAR yes 31832672
chr1 117267803 117267821 ESR2 JASPAR yes 31832673
chr1 117267804 117267819 ESR2 JASPAR yes 31832674
Genes associated with rs541554612[chr1:117267806], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More