EnhancerDB
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  3. rs541642496[chr1:16502762]
Enhancers that have rs541642496[chr1:16502762]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs541642496[chr1:16502762]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16502197 16502793 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107802226
chr1 16502762 16502783 IRF1 JASPAR yes 27031464
Genes associated with rs541642496[chr1:16502762], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More