EnhancerDB
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  3. rs541645420[chr16:21520790]
Enhancers that have rs541645420[chr16:21520790]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 21511505 21540535 enh3934
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Neural Stem Cells (H9) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs541645420[chr16:21520790]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 21517696 21520928 ZNF143 GTRD no Epithelial (MCF-7) 21696289
chr16 21517773 21520957 ZNF143 GTRD no Epithelial (MCF-7) 21696290
chr16 21517820 21520797 ZNF274 GTRD no Bone Marrow (K562) 21696294
chr16 21519056 21520954 ZNF143 GTRD no Epithelial (MCF-7) 21696356
chr16 21519376 21521093 TCF7L2 GTRD no Colon (HCT116) 21696373
chr16 21519382 21522037 TCF7L2 GTRD no Colon (HCT116) 21696374
chr16 21519414 21521334 TCF7L2 GTRD no Colon (HCT116) 21696375
chr16 21519484 21521195 TCF7L2 GTRD no Colon (HCT116) 21696376
chr16 21519652 21521163 TCF7L2 GTRD no Colon (HCT116) 21696387
chr16 21519740 21521072 TCF7L2 GTRD no Colon (HCT116) 21696389
chr16 21519747 21521082 ZNF274 GTRD no Bone Marrow (K562) 21696390
chr16 21519783 21521094 TCF7L2 GTRD no Colon (HCT116) 21696391
chr16 21519836 21521062 TCF7L2 GTRD no Colon (HCT116) 21696392
chr16 21520027 21520881 TCF7L2 GTRD no Colon (HCT116) 21696394
chr16 21520029 21520981 TCF7L2 GTRD no Colon (HCT116) 21696395
chr16 21520031 21520958 ZNF143 GTRD no Epithelial (MCF-7) 21696396
chr16 21520034 21520967 ZBTB33 GTRD no Lung (A549) 21696397
chr16 21520038 21520967 ZNF274 GTRD no Liver (HepG2) 21696398
chr16 21520039 21521078 ZNF274 GTRD no Liver (HepG2) 21696399
chr16 21520040 21520847 ZBTB33 GTRD no Lung (A549) 21696400
chr16 21520041 21522252 ZNF274 GTRD no Liver (HepG2) 21696401
chr16 21520044 21521181 TCF7L2 GTRD no Colon (HCT116) 21696402
chr16 21520045 21520963 ZNF143 GTRD no Epithelial (MCF-7) 21696403
chr16 21520048 21520962 TCF7L2 GTRD no Colon (HCT116) 21696405
chr16 21520051 21520812 ZNF274 GTRD no Bone Marrow (K562) 21696406
chr16 21520054 21520961 ZNF274 GTRD no Bone Marrow (K562) 21696409
chr16 21520055 21520824 ZNF143 GTRD no Epithelial (MCF-7) 21696410
chr16 21520056 21520847 ZNF143 GTRD no Epithelial (MCF-7) 21696412
chr16 21520057 21520979 ZNF143 GTRD no Epithelial (MCF-7) 21696413
chr16 21520058 21520831 ZBTB33 GTRD no Lung (A549) 21696414
chr16 21520058 21522232 ZNF274 GTRD no Liver (HepG2) 21696415
chr16 21520059 21520960 ZBTB33 GTRD no Lung (A549) 21696417
chr16 21520060 21520829 ZBTB33 GTRD no Brain (SK-N-SH) 21696418
chr16 21520060 21520970 ZNF274 GTRD no Liver (HepG2) 21696419
chr16 21520061 21520825 ZNF274 GTRD no Bone Marrow (K562) 21696421
chr16 21520061 21521033 TCF7L2 GTRD no Colon (HCT116) 21696422
chr16 21520062 21521045 ZNF274 GTRD no Liver (HepG2) 21696425
chr16 21520065 21520988 TCF7L2 GTRD no Colon (HCT116) 21696426
chr16 21520067 21520821 ZNF274 GTRD no Bone Marrow (K562) 21696431
chr16 21520067 21520822 ZNF274 GTRD no Bone Marrow (K562) 21696432
chr16 21520067 21520955 ZNF274 GTRD no Liver (HepG2) 21696433
chr16 21520068 21520825 ZNF274 GTRD no Liver (HepG2) 21696434
chr16 21520069 21520813 ZBTB33 GTRD no Brain (SK-N-SH) 21696435
chr16 21520069 21520963 ZNF274 GTRD no Bone Marrow (K562) 21696436
chr16 21520069 21522213 ZNF274 GTRD no Liver (HepG2) 21696437
chr16 21520070 21520811 ZNF274 GTRD no Bone Marrow (K562) 21696439
chr16 21520071 21520822 ZNF274 GTRD no Bone Marrow (K562) 21696441
chr16 21520072 21520825 ZBTB33 GTRD no Lung (A549) 21696442
chr16 21520072 21521024 ZNF274 GTRD no Liver (HepG2) 21696443
chr16 21520073 21520975 ZNF274 GTRD no Cervix (HeLa-S3) 21696444
chr16 21520074 21520806 ZNF274 GTRD no Bone Marrow (K562) 21696445
chr16 21520074 21520978 ZNF274 GTRD no Liver (HepG2) 21696446
chr16 21520076 21520945 ZNF274 GTRD no Bone Marrow (K562) 21696449
chr16 21520076 21521165 ZNF274 GTRD no Bone Marrow (K562) 21696450
chr16 21520077 21520803 ZNF274 GTRD no Bone Marrow (K562) 21696452
chr16 21520078 21520798 ZNF274 GTRD no Bone Marrow (K562) 21696453
chr16 21520079 21520799 ZNF274 GTRD no Bone Marrow (K562) 21696454
chr16 21520080 21520802 ZNF143 GTRD no Epithelial (MCF-7) 21696458
chr16 21520080 21520803 ZNF143 GTRD no Epithelial (MCF-7) 21696459
chr16 21520080 21520806 ZNF143 GTRD no Epithelial (MCF-7) 21696460
chr16 21520080 21520811 ZNF274 GTRD no Cervix (HeLa-S3) 21696461
chr16 21520080 21520824 ZNF274 GTRD no Liver (HepG2) 21696462
chr16 21520080 21522206 ZNF274 GTRD no Liver (HepG2) 21696463
chr16 21520081 21520803 ZNF143 GTRD no Epithelial (MCF-7) 21696464
chr16 21520081 21521064 ZNF274 GTRD no Liver (HepG2) 21696465
chr16 21520082 21520796 ZBTB33 GTRD no Brain (SK-N-SH) 21696466
chr16 21520082 21520797 ZNF274 GTRD no Cervix (HeLa-S3) 21696467
chr16 21520082 21520978 ZNF274 GTRD no Liver (HepG2) 21696468
chr16 21520082 21521261 ZNF274 GTRD no Liver (HepG2) 21696469
chr16 21520083 21520799 ZBTB33 GTRD no Brain (SK-N-SH) 21696470
chr16 21520083 21520959 ZNF143 GTRD no Epithelial (MCF-7) 21696471
chr16 21520083 21522202 ZNF274 GTRD no Liver (HepG2) 21696472
chr16 21520084 21520799 ZNF274 GTRD no Bone Marrow (K562) 21696474
chr16 21520084 21520816 ZNF274 GTRD no Bone Marrow (K562) 21696475
chr16 21520084 21520948 ZNF274 GTRD no Bone Marrow (K562) 21696476
chr16 21520085 21520814 ZNF274 GTRD no Liver (HepG2) 21696479
chr16 21520085 21520948 ZNF274 GTRD no Liver (HepG2) 21696480
chr16 21520086 21520814 ZBTB33 GTRD no Brain (SK-N-SH) 21696481
chr16 21520086 21520948 ZNF274 GTRD no Bone Marrow (K562) 21696482
chr16 21520087 21520797 ZNF274 GTRD no Bone Marrow (K562) 21696485
chr16 21520087 21520799 ZBTB33 GTRD no Lung (A549) 21696486
chr16 21520087 21520810 ZNF274 GTRD no Liver (HepG2) 21696487
chr16 21520088 21520977 ZNF274 GTRD no Liver (HepG2) 21696490
chr16 21520088 21520980 ZNF274 GTRD no Liver (HepG2) 21696491
chr16 21520089 21520801 ZNF274 GTRD no Cervix (HeLa-S3) 21696492
chr16 21520089 21520815 ZNF274 GTRD no Liver (HepG2) 21696493
chr16 21520089 21520978 ZNF274 GTRD no Liver (HepG2) 21696494
chr16 21520089 21522199 ZNF274 GTRD no Liver (HepG2) 21696495
chr16 21520090 21522202 ZNF274 GTRD no Liver (HepG2) 21696497
chr16 21520091 21520807 ZNF274 GTRD no Bone Marrow (K562) 21696499
chr16 21520092 21520826 ZNF274 GTRD no Liver (HepG2) 21696500
chr16 21520092 21520977 ZNF274 GTRD no Liver (HepG2) 21696501
chr16 21520092 21521318 ZNF274 GTRD no Liver (HepG2) 21696502
chr16 21520093 21520793 ZNF274 GTRD no Cervix (HeLa-S3) 21696507
chr16 21520093 21520968 ZNF274 GTRD no Bone Marrow (K562) 21696508
chr16 21520094 21520797 ZBTB33 GTRD no Brain (SK-N-SH) 21696511
chr16 21520095 21520794 ZNF274 GTRD no Bone Marrow (K562) 21696512
chr16 21520095 21520804 ZNF143 GTRD no Epithelial (MCF-7) 21696513
chr16 21520096 21520800 ZNF274 GTRD no Liver (HepG2) 21696516
chr16 21520098 21520795 ZNF274 GTRD no Liver (HepG2) 21696519
chr16 21520099 21520796 ZNF274 GTRD no Liver (HepG2) 21696522
chr16 21520100 21520793 ZNF274 GTRD no Liver (HepG2) 21696523
chr16 21520102 21520969 ZNF274 GTRD no Liver (HepG2) 21696527
chr16 21520107 21520793 ZNF274 GTRD no Bone Marrow (K562) 21696535
chr16 21520109 21520794 SOX2 GTRD no Neural Stem Cells (H9) 21696537
chr16 21520113 21520800 ZNF274 GTRD no Bone Marrow (K562) 21696541
chr16 21520114 21520809 ZNF274 GTRD no Liver (HepG2) 21696542
chr16 21520115 21520792 ZNF274 GTRD no Bone Marrow (K562) 21696543
chr16 21520116 21520832 ZNF274 GTRD no Bone Marrow (K562) 21696544
chr16 21520118 21520817 ZNF274 GTRD no Liver (HepG2) 21696547
chr16 21520123 21520802 ZNF274 GTRD no Bone Marrow (K562) 21696553
chr16 21520132 21520800 ZNF274 GTRD no Liver (HepG2) 21696558
chr16 21520152 21520955 ZNF274 GTRD no Liver (HepG2) 21696562
chr16 21520154 21520812 TCF7L2 GTRD no Colon (HCT116) 21696564
chr16 21520155 21520954 ZNF274 GTRD no Liver (HepG2) 21696565
chr16 21520304 21520832 ZBTB33 GTRD no Lung (A549) 21696577
chr16 21520393 21520800 SOX2 GTRD no Neural Stem Cells (H9) 21696580
chr16 21520569 21520845 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21696589
chr16 21520674 21521130 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21696590
Genes associated with rs541645420[chr16:21520790], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More