EnhancerDB
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  3. rs541695601[chr1:223910766]
Enhancers that have rs541695601[chr1:223910766]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs541695601[chr1:223910766]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223910753 223910766 SMAD2 JASPAR yes 35672734
chr1 223910756 223910766 TBR1 JASPAR yes 35672735
chr1 223910757 223910767 TBX21 JASPAR yes 35672736
chr1 223910758 223910766 MGA JASPAR yes 35672737
chr1 223910758 223910766 TBX15 JASPAR yes 35672738
chr1 223910758 223910766 TBX1 JASPAR yes 35672739
chr1 223910758 223910766 TBX4 JASPAR yes 35672740
chr1 223910758 223910766 TBX5 JASPAR yes 35672741
chr1 223910758 223910767 ZEB1 JASPAR yes 35672742
chr1 223910758 223910770 PKNOX1 JASPAR yes 35672743
chr1 223910758 223910770 TGIF1 JASPAR yes 35672744
chr1 223910758 223910771 ZBTB18 JASPAR yes 35672745
chr1 223910759 223910769 FIGLA JASPAR yes 35672746
chr1 223910759 223910769 ID4 JASPAR yes 35672747
chr1 223910759 223910769 TCF3 JASPAR yes 35672748
chr1 223910759 223910769 TCF4 JASPAR yes 35672749
chr1 223910760 223910769 SNAI2 JASPAR yes 35672750
chr1 223910761 223910766 USF2 TRANSFAC yes 35672751
Genes associated with rs541695601[chr1:223910766], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More