EnhancerDB
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  3. rs541707600[chr17:1890042]
Enhancers that have rs541707600[chr17:1890042]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 1888491 1923135 enh16929
Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs541707600[chr17:1890042]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 1890035 1890046 HOXA10 JASPAR yes 52712919
chr17 1890036 1890046 HOXD13 JASPAR yes 52712920
chr17 1890037 1890047 HOXA13 JASPAR yes 52712921
chr17 1890037 1890047 HOXB13 JASPAR yes 52712922
chr17 1890037 1890047 HOXD13 JASPAR yes 52712923
chr17 1890038 1890042 YY1 TRANSFAC yes 52712924
chr17 1890039 1890054 FOXP1 JASPAR yes 52712925
chr17 1890041 1890047 TBP TRANSFAC yes 52712926
Genes associated with rs541707600[chr17:1890042], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More