EnhancerDB
  1. Home
  2. SNP
  3. rs541720086[chr1:225632299]
Enhancers that have rs541720086[chr1:225632299]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs541720086[chr1:225632299]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225632204 225632577 TCF7L2 GTRD no Colon (HCT116) 21384649
chr1 225632291 225632306 MEF2A JASPAR yes 35740866
chr1 225632292 225632307 MEF2C JASPAR yes 35740867
chr1 225632293 225632305 MEF2A JASPAR yes 35740868
chr1 225632293 225632305 MEF2B JASPAR yes 35740869
chr1 225632293 225632305 MEF2D JASPAR yes 35740870
chr1 225632295 225632299 YY1 TRANSFAC yes 35740871
Genes associated with rs541720086[chr1:225632299], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More