EnhancerDB
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  3. rs541935299[chr16:87900109]
Enhancers that have rs541935299[chr16:87900109]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 87873744 87902035 enh4182
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs541935299[chr16:87900109]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 87899893 87900203 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21735364
chr16 87899893 87900203 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108221459
chr16 87900084 87901006 TCF7L2 GTRD no Colon (HCT116) 21735365
chr16 87900097 87900116 PAX5 JASPAR yes 12249535
Genes associated with rs541935299[chr16:87900109], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More