EnhancerDB
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Enhancers that have rs542019786[chr1:212088894]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212081505 212111174 enh12636
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs542019786[chr1:212088894]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212088080 212088976 ZNF143 GTRD no Epithelial (MCF-7) 21377490
chr1 212088109 212088978 ZNF143 GTRD no Epithelial (MCF-7) 21377492
chr1 212088130 212089046 ZNF143 GTRD no Epithelial (MCF-7) 21377494
chr1 212088170 212088969 ZNF143 GTRD no Epithelial (MCF-7) 21377495
chr1 212088225 212088979 ZNF143 GTRD no Epithelial (MCF-7) 21377497
chr1 212088252 212089127 P63 GTRD no Skin (Keratinocyte) 21377499
chr1 212088273 212089143 P63 GTRD no Skin (Keratinocyte) 21377500
chr1 212088364 212088900 ZNF143 GTRD no Epithelial (MCF-7) 21377505
chr1 212088376 212088901 ZNF143 GTRD no Epithelial (MCF-7) 21377506
chr1 212088891 212088905 SPI1 JASPAR yes 35090823
chr1 212088891 212088905 SPIC JASPAR yes 35090824
chr1 212088892 212088905 ELF1 JASPAR yes 35090825
chr1 212088893 212088905 EHF JASPAR yes 35090826
chr1 212088894 212088905 ELF5 JASPAR yes 35090827
Genes associated with rs542019786[chr1:212088894], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More