EnhancerDB
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  3. rs542102947[chr1:232749277]
Enhancers that have rs542102947[chr1:232749277]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 232744026 232773755 enh12786
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Lung Muscle (A673) Heart
Transcript factors that have rs542102947[chr1:232749277]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 232749214 232749343 TCF7L2 GTRD no Colon (HCT116) 21392288
chr1 232749272 232749284 EHF JASPAR yes 36177141
chr1 232749272 232749284 ELF4 JASPAR yes 36177142
Genes associated with rs542102947[chr1:232749277], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More