EnhancerDB
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  3. rs542116979[chr1:230220347]
Enhancers that have rs542116979[chr1:230220347]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230203175 230225395 enh12769
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 230220164 230220401 vista5487
VISTA
Transcript factors that have rs542116979[chr1:230220347]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230220083 230220733 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391242
chr1 230220083 230220733 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878355
chr1 230220083 230220733 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878356
chr1 230220089 230220525 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878357
chr1 230220089 230220525 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878358
chr1 230220125 230220785 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391243
chr1 230220125 230220785 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878359
chr1 230220125 230220785 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878360
chr1 230220133 230220517 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878361
chr1 230220133 230220517 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878362
chr1 230220184 230220840 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878363
chr1 230220184 230220840 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878364
chr1 230220188 230220764 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878365
chr1 230220188 230220764 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878366
chr1 230220210 230220750 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878367
chr1 230220210 230220750 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878368
chr1 230220224 230220800 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391244
chr1 230220224 230220800 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878369
chr1 230220224 230220800 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878370
chr1 230220252 230220716 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391245
chr1 230220252 230220716 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878371
chr1 230220252 230220716 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878372
chr1 230220252 230220756 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878373
chr1 230220252 230220756 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878374
chr1 230220260 230221087 ZNF274 GTRD no Bone Marrow (K562) 107878375
chr1 230220260 230221087 ZNF274 GTRD no Bone Marrow (K562) 107878376
chr1 230220262 230220746 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878377
chr1 230220262 230220746 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878378
chr1 230220271 230220727 JUND UCSC Txn Factor no Conserved 107878379
chr1 230220271 230220727 JUND UCSC Txn Factor no Conserved 107878380
chr1 230220271 230220727 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107878381
chr1 230220271 230220727 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107878382
chr1 230220273 230220757 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878383
chr1 230220273 230220757 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878384
chr1 230220274 230220490 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878385
chr1 230220274 230220490 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878386
chr1 230220281 230220471 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21391246
chr1 230220281 230220471 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107878387
chr1 230220283 230220747 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21391247
chr1 230220283 230220747 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107878388
chr1 230220283 230220747 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107878389
chr1 230220295 230220991 ZNF274 GTRD no Cervix (HeLa-S3) 21391248
chr1 230220295 230220991 ZNF274 GTRD no Cervix (HeLa-S3) 107878390
chr1 230220295 230220991 ZNF274 GTRD no Cervix (HeLa-S3) 107878391
chr1 230220310 230220714 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391249
chr1 230220310 230220714 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878392
chr1 230220310 230220714 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878393
chr1 230220314 230220690 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21391250
chr1 230220314 230220690 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107878394
chr1 230220314 230220690 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 107878395
chr1 230220323 230220916 ZNF274 GTRD no Bone Marrow (K562) 107878396
chr1 230220323 230220916 ZNF274 GTRD no Bone Marrow (K562) 107878397
chr1 230220328 230220698 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391251
chr1 230220328 230220698 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878398
chr1 230220328 230220698 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878399
chr1 230220332 230220881 ZNF274 GTRD no Bone Marrow (K562) 107878400
chr1 230220332 230220881 ZNF274 GTRD no Bone Marrow (K562) 107878401
chr1 230220341 230220355 PLAG1 JASPAR yes 36019740
chr1 230220341 230220355 PLAG1 JASPAR yes 118477388
chr1 230220343 230220693 FOSL2 UCSC Txn Factor no Conserved 107878402
chr1 230220343 230220693 FOSL2 UCSC Txn Factor no Conserved 107878403
chr1 230220343 230220693 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878404
chr1 230220343 230220693 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878405
chr1 230220344 230220728 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391252
chr1 230220344 230220728 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878406
chr1 230220344 230220728 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878407
chr1 230220344 230220740 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391253
chr1 230220344 230220740 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878408
chr1 230220344 230220740 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878409
Genes associated with rs542116979[chr1:230220347], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More