EnhancerDB
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  3. rs542240345[chr17:59410513]
Enhancers that have rs542240345[chr17:59410513]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs542240345[chr17:59410513]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59410503 59410513 HOXA13 JASPAR yes 55149793
chr17 59410509 59410515 NFIC JASPAR yes 55149794
chr17 59410511 59410520 SNAI2 JASPAR yes 55149795
chr17 59410511 59410521 TCF4 JASPAR yes 55149796
chr17 59410513 59410522 ZEB1 JASPAR yes 55149797
Genes associated with rs542240345[chr17:59410513], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More