EnhancerDB
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  3. rs542279622[chr19:13955067]
Enhancers that have rs542279622[chr19:13955067]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542279622[chr19:13955067]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13948875 13955635 POLR2A UCSC Txn Factor no Conserved 108390133
chr19 13948875 13955635 POLR2A UCSC Txn Factor no Conserved 108390134
chr19 13954960 13955635 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852218
chr19 13954960 13955635 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390163
chr19 13954976 13955506 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852219
chr19 13954976 13955506 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390164
chr19 13954977 13955353 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852220
chr19 13954977 13955353 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390165
chr19 13954982 13955286 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852221
chr19 13954982 13955286 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390166
chr19 13954995 13955499 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852222
chr19 13954995 13955499 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390167
chr19 13955005 13955389 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852223
chr19 13955005 13955389 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390168
chr19 13955023 13955353 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852224
chr19 13955023 13955353 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390169
chr19 13955039 13955503 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852225
chr19 13955039 13955503 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390170
chr19 13955042 13955446 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21852226
chr19 13955042 13955446 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108390171
chr19 13955054 13955069 TFAP2C JASPAR yes 112537318
chr19 13955061 13955437 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852227
chr19 13955061 13955437 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390172
chr19 13955065 13955069 H4TF2 TRANSFAC yes 112537319
chr19 13955066 13955077 YY2 JASPAR yes 112537320
chr19 13955066 13955502 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21852228
chr19 13955066 13955502 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108390173
Genes associated with rs542279622[chr19:13955067], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More