EnhancerDB
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  3. rs542342333[chr17:29822384]
Enhancers that have rs542342333[chr17:29822384]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 29816091 29829595 enh4360
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Blood (T-cell) Lung (PC-9) Blood (OCI-LY7) Blood (GM12878) Placenta Thyroid Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs542342333[chr17:29822384]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 29822378 29822399 IRF1 JASPAR yes 53842508
chr17 29822379 29822400 IRF1 JASPAR yes 53842509
chr17 29822381 29822402 IRF1 JASPAR yes 53842510
chr17 29822382 29822403 IRF1 JASPAR yes 53842511
chr17 29822383 29822398 FOXP1 JASPAR yes 53842512
chr17 29822383 29822404 IRF1 JASPAR yes 53842513
chr17 29822384 29822399 FOXP1 JASPAR yes 53842514
chr17 29822384 29822405 IRF1 JASPAR yes 53842515
Genes associated with rs542342333[chr17:29822384], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More