EnhancerDB
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  3. rs542394057[chr5:173339782]
Enhancers that have rs542394057[chr5:173339782]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173338825 173358415 enh22829
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Esophagus Astrocyte Liver Blood (GM12878) Stomach Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Spleen Neural Stem Cells (H9) Heart
Transcript factors that have rs542394057[chr5:173339782]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173339778 173339793 FOXP1 JASPAR yes 67921089
chr5 173339779 173339794 FOXP1 JASPAR yes 67921090
chr5 173339780 173339786 TBP TRANSFAC yes 67921091
chr5 173339780 173339795 FOXP1 JASPAR yes 67921092
chr5 173339780 173339801 IRF1 JASPAR yes 67921093
chr5 173339781 173339796 FOXP1 JASPAR yes 67921094
Genes associated with rs542394057[chr5:173339782], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More