EnhancerDB
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  3. rs542411159[chr1:205344298]
Enhancers that have rs542411159[chr1:205344298]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205338025 205348135 enh27435
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Bone (Osteoblast) Colon (HCT116) Thyroid Uterus Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Stomach
Transcript factors that have rs542411159[chr1:205344298]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205342830 205344627 TCF7L2 GTRD no Colon (HCT116) 21371806
chr1 205342848 205344516 TCF7L2 GTRD no Colon (HCT116) 21371807
chr1 205343125 205344618 TCF7L2 GTRD no Colon (HCT116) 21371808
chr1 205343277 205344475 TCF7L2 GTRD no Colon (HCT116) 21371813
chr1 205343459 205344594 TCF7L2 GTRD no Colon (HCT116) 21371815
chr1 205343898 205344995 AR GTRD no Prostate (PC-3) 21371824
chr1 205343920 205344376 TCF7L2 GTRD no Colon (HCT116) 21371826
chr1 205344288 205344301 POU2F2 JASPAR yes 34757255
chr1 205344288 205344302 POU1F1 JASPAR yes 34757256
chr1 205344295 205344310 PRDM1 JASPAR yes 34757257
chr1 205344296 205344300 YY1 TRANSFAC yes 34757258
Genes associated with rs542411159[chr1:205344298], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More