EnhancerDB
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  3. rs542420152[chr12:52831669]
Enhancers that have rs542420152[chr12:52831669]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52827009 52839071 enh14730
Skin (Keratinocyte) Prostate (PC-3) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs542420152[chr12:52831669]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52831201 52831838 ZNF143 GTRD no Epithelial (MCF-7) 21547038
chr12 52831236 52831833 ZNF143 GTRD no Epithelial (MCF-7) 21547039
chr12 52831659 52831674 RUNX2 JASPAR yes 120940874
chr12 52831659 52831677 ESR1 JASPAR yes 120940875
chr12 52831660 52831680 ESR1 JASPAR yes 120940876
chr12 52831669 52831678 SNAI2 JASPAR yes 120940877
Genes associated with rs542420152[chr12:52831669], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More