EnhancerDB
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  3. rs542421902[chr6:12334555]
Enhancers that have rs542421902[chr6:12334555]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12317105 12339155 enh23034
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Blood (GM12878) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs542421902[chr6:12334555]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12334536 12334557 IRF1 JASPAR yes 99962126
Genes associated with rs542421902[chr6:12334555], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More