EnhancerDB
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  3. rs542538439[chr4:7960206]
Enhancers that have rs542538439[chr4:7960206]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr4 7955942 7984080 enh21353
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542538439[chr4:7960206]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr4 7960191 7960212 IRF1 JASPAR yes 88147519
chr4 7960197 7960212 MEF2C JASPAR yes 88147520
chr4 7960198 7960210 POU2F1 JASPAR yes 88147521
chr4 7960198 7960211 POU3F3 JASPAR yes 88147522
chr4 7960199 7960211 POU3F1 JASPAR yes 88147523
chr4 7960199 7960211 POU3F2 JASPAR yes 88147524
chr4 7960202 7960213 HOXA10 JASPAR yes 88147526
chr4 7960203 7960213 GSX2 JASPAR yes 88147527
chr4 7960203 7960213 MNX1 JASPAR yes 88147528
chr4 7960204 7960212 BARX1 JASPAR yes 88147529
chr4 7960204 7960213 VENTX JASPAR yes 88147530
chr4 7960205 7960216 PHOX2A JASPAR yes 88147531
chr4 7960205 7960216 PROP1 JASPAR yes 88147532
Genes associated with rs542538439[chr4:7960206], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More