EnhancerDB
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  3. rs542575129[chr12:46953167]
Enhancers that have rs542575129[chr12:46953167]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46935165 46958895 enh14680
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr12 46953166 46953383 vista13244
VISTA
Transcript factors that have rs542575129[chr12:46953167]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46952391 46954018 AR GTRD no Prostate (PC-3) 21542602
chr12 46952391 46954018 AR GTRD no Prostate (PC-3) 108028039
chr12 46952402 46953497 ZNF143 GTRD no Epithelial (MCF-7) 21542603
chr12 46952402 46953497 ZNF143 GTRD no Epithelial (MCF-7) 108028040
chr12 46952451 46953436 ZNF143 GTRD no Epithelial (MCF-7) 21542604
chr12 46952451 46953436 ZNF143 GTRD no Epithelial (MCF-7) 108028041
chr12 46952568 46953538 ZBTB33 GTRD no Brain (SK-N-SH) 108028042
chr12 46952586 46953618 ZBTB33 GTRD no Brain (SK-N-SH) 108028043
chr12 46952703 46953240 ZNF143 GTRD no Epithelial (MCF-7) 21542605
chr12 46952703 46953240 ZNF143 GTRD no Epithelial (MCF-7) 108028044
chr12 46952713 46953699 ZNF274 GTRD no Cervix (HeLa-S3) 21542606
chr12 46952713 46953699 ZNF274 GTRD no Cervix (HeLa-S3) 108028045
chr12 46952745 46953354 ZNF143 GTRD no Epithelial (MCF-7) 21542607
chr12 46952745 46953354 ZNF143 GTRD no Epithelial (MCF-7) 108028046
chr12 46952755 46953575 ZBTB33 GTRD no Brain (SK-N-SH) 108028047
chr12 46952779 46953437 ZNF274 GTRD no Cervix (HeLa-S3) 21542608
chr12 46952779 46953437 ZNF274 GTRD no Cervix (HeLa-S3) 108028048
chr12 46952821 46953575 ZBTB33 GTRD no Brain (SK-N-SH) 108028049
chr12 46952874 46953973 ZNF274 GTRD no Cervix (HeLa-S3) 21542609
chr12 46952874 46953973 ZNF274 GTRD no Cervix (HeLa-S3) 108028050
chr12 46952913 46953533 ZBTB33 GTRD no Brain (SK-N-SH) 108028051
chr12 46952940 46953337 ZNF274 GTRD no Cervix (HeLa-S3) 21542610
chr12 46952940 46953337 ZNF274 GTRD no Cervix (HeLa-S3) 108028052
chr12 46952982 46953199 ZNF274 GTRD no Cervix (HeLa-S3) 21542611
chr12 46952982 46953199 ZNF274 GTRD no Cervix (HeLa-S3) 108028053
Genes associated with rs542575129[chr12:46953167], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More