EnhancerDB
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  3. rs542606486[chr17:49036414]
Enhancers that have rs542606486[chr17:49036414]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 49015225 49039275 enh17224
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542606486[chr17:49036414]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 49035060 49036748 ZNF143 GTRD no Epithelial (MCF-7) 21771875
chr17 49035203 49036690 ZNF143 GTRD no Epithelial (MCF-7) 21771877
chr17 49035215 49036454 ZNF143 GTRD no Epithelial (MCF-7) 21771878
chr17 49035215 49036679 ZNF143 GTRD no Epithelial (MCF-7) 21771879
chr17 49035231 49036464 TCF7L2 GTRD no Colon (HCT116) 21771880
chr17 49035241 49036441 TCF7L2 GTRD no Colon (HCT116) 21771881
chr17 49035244 49036768 ZNF143 GTRD no Epithelial (MCF-7) 21771882
chr17 49035257 49036419 ZNF143 GTRD no Epithelial (MCF-7) 21771883
chr17 49035272 49036503 TCF7L2 GTRD no Colon (HCT116) 21771884
chr17 49035273 49036846 ZNF143 GTRD no Epithelial (MCF-7) 21771885
chr17 49035275 49036437 TCF7L2 GTRD no Colon (HCT116) 21771886
chr17 49035300 49036423 TCF7L2 GTRD no Colon (HCT116) 21771887
chr17 49035304 49036434 ZNF274 GTRD no Bone Marrow (K562) 21771888
chr17 49035304 49036652 TCF7L2 GTRD no Colon (HCT116) 21771889
chr17 49035305 49036614 ZNF143 GTRD no Epithelial (MCF-7) 21771890
chr17 49035317 49037099 ZNF143 GTRD no Epithelial (MCF-7) 21771891
chr17 49035323 49036453 ZNF143 GTRD no Epithelial (MCF-7) 21771892
chr17 49035348 49036710 ZNF143 GTRD no Epithelial (MCF-7) 21771894
chr17 49035371 49036445 ZNF143 GTRD no Epithelial (MCF-7) 21771896
chr17 49035395 49036487 TCF7L2 GTRD no Colon (HCT116) 21771897
chr17 49035396 49036445 ZNF143 GTRD no Epithelial (MCF-7) 21771898
chr17 49035396 49036491 TCF7L2 GTRD no Colon (HCT116) 21771899
chr17 49035404 49036436 ZBTB33 GTRD no Brain (SK-N-SH) 21771900
chr17 49035409 49036476 ZNF143 GTRD no Epithelial (MCF-7) 21771901
chr17 49035412 49036603 ZNF143 GTRD no Epithelial (MCF-7) 21771902
chr17 49035418 49036945 ZNF143 GTRD no Epithelial (MCF-7) 21771903
chr17 49035436 49036451 ZNF143 GTRD no Epithelial (MCF-7) 21771904
chr17 49035478 49036588 ZNF274 GTRD no Bone Marrow (K562) 21771906
chr17 49035480 49036543 ZNF274 GTRD no Bone Marrow (K562) 21771907
chr17 49035502 49036451 TCF7L2 GTRD no Colon (HCT116) 21771908
chr17 49035509 49036689 ZNF143 GTRD no Epithelial (MCF-7) 21771909
chr17 49035553 49036459 ZNF143 GTRD no Epithelial (MCF-7) 21771910
chr17 49035555 49036582 ZNF143 GTRD no Epithelial (MCF-7) 21771911
chr17 49035572 49036463 ZBTB33 GTRD no Brain (SK-N-SH) 21771913
chr17 49035589 49036422 TCF7L2 GTRD no Colon (HCT116) 21771914
chr17 49035605 49036515 ZNF143 GTRD no Epithelial (MCF-7) 21771915
chr17 49035656 49036451 ZBTB33 GTRD no Brain (SK-N-SH) 21771917
chr17 49035669 49036451 ZNF274 GTRD no Liver (HepG2) 21771918
chr17 49035679 49036447 ZNF143 GTRD no Epithelial (MCF-7) 21771919
chr17 49035679 49036572 ZNF274 GTRD no Bone Marrow (K562) 21771920
chr17 49035686 49036625 ZNF274 GTRD no Blood (GM12878) 21771921
chr17 49035689 49036428 ZNF274 GTRD no Blood (GM12878) 21771923
chr17 49035690 49036556 ZNF274 GTRD no Bone Marrow (K562) 21771924
chr17 49035692 49036561 ZNF274 GTRD no Liver (HepG2) 21771925
chr17 49035695 49036488 ZNF143 GTRD no Epithelial (MCF-7) 21771926
chr17 49035695 49036536 ZNF274 GTRD no Cervix (HeLa-S3) 21771927
chr17 49035707 49036491 ZNF274 GTRD no Bone Marrow (K562) 21771928
chr17 49035721 49036753 ZNF274 GTRD no Bone Marrow (K562) 21771929
chr17 49035722 49036514 ZNF274 GTRD no Bone Marrow (K562) 21771930
chr17 49035737 49036516 ZBTB33 GTRD no Brain (SK-N-SH) 21771931
chr17 49035738 49036449 ZNF274 GTRD no Blood (GM12878) 21771932
chr17 49035754 49036596 ZNF274 GTRD no Liver (HepG2) 21771934
chr17 49035759 49036478 ZNF274 GTRD no Liver (HepG2) 21771935
chr17 49035764 49036640 ZNF274 GTRD no Bone Marrow (K562) 21771936
chr17 49035764 49036671 ZNF274 GTRD no Liver (HepG2) 21771937
chr17 49035765 49036436 ZNF274 GTRD no Liver (HepG2) 21771938
chr17 49035772 49036499 ZNF274 GTRD no Liver (HepG2) 21771939
chr17 49035792 49036600 ZNF274 GTRD no Blood (GM12878) 21771942
chr17 49035794 49036748 ZNF274 GTRD no Cervix (HeLa-S3) 21771944
chr17 49035806 49036428 ZNF274 GTRD no Blood (GM12878) 21771945
chr17 49035806 49036746 ZNF274 GTRD no Blood (GM12878) 21771946
chr17 49035819 49036502 ZNF274 GTRD no Blood (GM12878) 21771947
chr17 49035842 49036528 ZNF274 GTRD no Bone Marrow (K562) 21771949
chr17 49035897 49036470 ZNF274 GTRD no Liver (HepG2) 21771950
chr17 49035906 49036502 ZNF274 GTRD no Bone Marrow (K562) 21771951
chr17 49035924 49036492 ZNF274 GTRD no Bone Marrow (K562) 21771952
chr17 49035933 49036451 ZNF274 GTRD no Blood (GM12878) 21771953
chr17 49035947 49036424 ZNF274 GTRD no Blood (GM12878) 21771954
chr17 49035968 49036432 TCF7L2 GTRD no Colon (HCT116) 21771958
chr17 49035998 49036465 ZNF274 GTRD no Cervix (HeLa-S3) 21771960
chr17 49035998 49036518 ZNF274 GTRD no Bone Marrow (K562) 21771961
chr17 49036023 49036462 ZNF274 GTRD no Liver (HepG2) 21771962
chr17 49036061 49036453 ZNF274 GTRD no Bone Marrow (K562) 21771964
chr17 49036070 49036479 ZNF274 GTRD no Bone Marrow (K562) 21771965
chr17 49036116 49036562 ZNF274 GTRD no Bone Marrow (K562) 21771970
chr17 49036399 49036417 IRF2 JASPAR yes 54739330
chr17 49036405 49036416 HOXA10 JASPAR yes 54739331
chr17 49036405 49036420 HNF1A JASPAR yes 54739332
chr17 49036406 49036416 GSX2 JASPAR yes 54739333
chr17 49036406 49036416 HOXB2 JASPAR yes 54739334
chr17 49036406 49036416 HOXB3 JASPAR yes 54739335
chr17 49036406 49036416 MNX1 JASPAR yes 54739336
chr17 49036406 49036416 POU6F1 JASPAR yes 54739337
chr17 49036407 49036415 LMX1A JASPAR yes 54739338
chr17 49036407 49036415 LMX1B JASPAR yes 54739339
chr17 49036407 49036415 NKX6-1 JASPAR yes 54739340
chr17 49036407 49036415 NKX6-2 JASPAR yes 54739341
chr17 49036407 49036415 VAX1 JASPAR yes 54739342
chr17 49036407 49036415 VAX2 JASPAR yes 54739343
chr17 49036407 49036415 VSX1 JASPAR yes 54739344
chr17 49036407 49036415 VSX2 JASPAR yes 54739345
chr17 49036411 49036422 FOXC1 JASPAR yes 54739346
chr17 49036414 49036425 CDX2 JASPAR yes 54739347
Genes associated with rs542606486[chr17:49036414], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More