EnhancerDB
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  3. rs542641601[chr1:203497310]
Enhancers that have rs542641601[chr1:203497310]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542641601[chr1:203497310]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203496530 203497315 ZNF143 GTRD no Epithelial (MCF-7) 21369232
chr1 203497294 203497314 RREB1 JASPAR yes 34635895
chr1 203497294 203497315 ZNF263 JASPAR yes 34635896
chr1 203497295 203497315 RREB1 JASPAR yes 34635897
chr1 203497296 203497316 RREB1 JASPAR yes 34635900
chr1 203497296 203497586 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21369233
chr1 203497297 203497317 RREB1 JASPAR yes 34635902
chr1 203497298 203497318 RREB1 JASPAR yes 34635903
chr1 203497299 203497319 RREB1 JASPAR yes 34635904
chr1 203497300 203497320 RREB1 JASPAR yes 34635905
chr1 203497300 203497321 ZNF263 JASPAR yes 34635906
chr1 203497302 203497322 RREB1 JASPAR yes 34635907
chr1 203497303 203497317 PLAG1 JASPAR yes 34635908
chr1 203497303 203497323 RREB1 JASPAR yes 34635909
chr1 203497304 203497314 SP1 JASPAR yes 34635910
chr1 203497304 203497324 RREB1 JASPAR yes 34635911
chr1 203497305 203497315 SP1 JASPAR yes 34635912
chr1 203497305 203497325 RREB1 JASPAR yes 34635913
chr1 203497306 203497326 RREB1 JASPAR yes 34635914
chr1 203497307 203497317 ZNF740 JASPAR yes 34635915
Genes associated with rs542641601[chr1:203497310], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More