EnhancerDB
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  3. rs542647674[chr1:172863522]
Enhancers that have rs542647674[chr1:172863522]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
chr1 172863432 172863838 vista3920
VISTA
Transcript factors that have rs542647674[chr1:172863522]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172863380 172863976 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107846231
chr1 172863500 172863736 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107846232
chr1 172863507 172863837 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107846233
chr1 172863519 172863529 HOXC10 JASPAR yes 33162297
chr1 172863519 172863529 HOXD11 JASPAR yes 33162298
chr1 172863519 172863529 HOXC10 JASPAR yes 118400367
chr1 172863519 172863529 HOXD11 JASPAR yes 118400368
chr1 172863519 172863530 HOXC11 JASPAR yes 33162299
chr1 172863519 172863530 HOXD12 JASPAR yes 33162300
chr1 172863519 172863530 HOXC11 JASPAR yes 118400369
chr1 172863519 172863530 HOXD12 JASPAR yes 118400370
chr1 172863520 172863531 CDX2 JASPAR yes 33162301
chr1 172863520 172863531 CDX2 JASPAR yes 118400371
Genes associated with rs542647674[chr1:172863522], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More