EnhancerDB
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  3. rs542651007[chr1:54844875]
Enhancers that have rs542651007[chr1:54844875]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54820685 54854719 enh11867
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs542651007[chr1:54844875]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54844264 54844934 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107804942
chr1 54844872 54844882 GCM2 JASPAR yes 28980125
chr1 54844872 54844883 GCM1 JASPAR yes 28980126
Genes associated with rs542651007[chr1:54844875], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More