EnhancerDB
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  3. rs542713404[chr19:1180544]
Enhancers that have rs542713404[chr19:1180544]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1174025 1184042 enh17839
Skin (Keratinocyte) Prostate (PC-3) Large Intestine Esophagus Stomach Placenta Thyroid Lung (PC-9) Pancreas Epithelial (MCF-7)
Transcript factors that have rs542713404[chr19:1180544]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1180132 1181012 ZNF143 GTRD no Epithelial (MCF-7) 21831596
chr19 1180180 1180876 ZNF143 GTRD no Epithelial (MCF-7) 21831597
chr19 1180218 1181175 ZNF143 GTRD no Epithelial (MCF-7) 21831598
chr19 1180225 1180901 ZNF143 GTRD no Epithelial (MCF-7) 21831599
chr19 1180259 1180875 ZNF143 GTRD no Epithelial (MCF-7) 21831600
chr19 1180288 1180904 ZNF143 GTRD no Epithelial (MCF-7) 21831601
chr19 1180297 1180844 ZNF143 GTRD no Epithelial (MCF-7) 21831602
chr19 1180317 1180973 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21831603
chr19 1180320 1180848 ZNF143 GTRD no Epithelial (MCF-7) 21831604
chr19 1180320 1180868 ZNF143 GTRD no Epithelial (MCF-7) 21831605
chr19 1180329 1180866 ZNF143 GTRD no Epithelial (MCF-7) 21831606
chr19 1180332 1180870 ZNF143 GTRD no Epithelial (MCF-7) 21831607
chr19 1180332 1181085 ZNF143 GTRD no Epithelial (MCF-7) 21831608
chr19 1180343 1180934 ZNF143 GTRD no Epithelial (MCF-7) 21831609
chr19 1180354 1181097 ZNF143 GTRD no Epithelial (MCF-7) 21831610
chr19 1180375 1180947 ZNF143 GTRD no Epithelial (MCF-7) 21831611
chr19 1180395 1180705 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21831612
chr19 1180480 1180950 ZNF143 GTRD no Epithelial (MCF-7) 21831613
chr19 1180531 1180851 ZNF143 GTRD no Epithelial (MCF-7) 21831614
chr19 1180543 1180553 SP1 JASPAR yes 111999111
chr19 1180544 1180554 SP1 JASPAR yes 111999112
chr19 1180544 1180565 ZNF263 JASPAR yes 111999113
Genes associated with rs542713404[chr19:1180544], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More