EnhancerDB
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  3. rs542724162[chr11:62217940]
Enhancers that have rs542724162[chr11:62217940]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 62190145 62243455 enh13972
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542724162[chr11:62217940]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 62217931 62217941 GSC2 JASPAR yes 39202492
chr11 62217932 62217940 OTX1 JASPAR yes 39202493
chr11 62217932 62217940 OTX2 JASPAR yes 39202494
chr11 62217932 62217940 RHOXF1 JASPAR yes 39202495
chr11 62217932 62217941 PITX3 JASPAR yes 39202496
chr11 62217939 62217949 TBX21 JASPAR yes 39202497
chr11 62217939 62217950 TBX20 JASPAR yes 39202498
chr11 62217939 62217950 TBX2 JASPAR yes 39202499
chr11 62217939 62217952 EOMES JASPAR yes 39202500
chr11 62217940 62217948 MGA JASPAR yes 39202501
chr11 62217940 62217948 TBX15 JASPAR yes 39202502
chr11 62217940 62217948 TBX1 JASPAR yes 39202503
chr11 62217940 62217948 TBX4 JASPAR yes 39202504
chr11 62217940 62217948 TBX5 JASPAR yes 39202505
chr11 62217940 62217950 TBR1 JASPAR yes 39202506
chr11 62217940 62217953 SMAD2 JASPAR yes 39202507
Genes associated with rs542724162[chr11:62217940], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More