EnhancerDB
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  3. rs542760992[chr17:27968955]
Enhancers that have rs542760992[chr17:27968955]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 27963570 27975125 enh4328
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542760992[chr17:27968955]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 27968949 27968970 IRF1 JASPAR yes 53744668
chr17 27968950 27968965 FOXP1 JASPAR yes 53744669
chr17 27968950 27968971 IRF1 JASPAR yes 53744670
chr17 27968951 27968972 IRF1 JASPAR yes 53744671
chr17 27968952 27968967 FOXP1 JASPAR yes 53744672
chr17 27968952 27968973 IRF1 JASPAR yes 53744673
chr17 27968953 27968974 IRF1 JASPAR yes 53744674
chr17 27968954 27968969 FOXP1 JASPAR yes 53744675
chr17 27968955 27968970 FOXP1 JASPAR yes 53744676
Genes associated with rs542760992[chr17:27968955], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More