EnhancerDB
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  3. rs542854080[chr6:25170277]
Enhancers that have rs542854080[chr6:25170277]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 25163505 25184315 enh23129
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr6 25170221 25170501 vista51373
VISTA
Transcript factors that have rs542854080[chr6:25170277]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 25170265 25170286 IRF1 JASPAR yes 70336615
chr6 25170265 25170286 IRF1 JASPAR yes 100830888
chr6 25170271 25170292 IRF1 JASPAR yes 70336616
chr6 25170271 25170292 IRF1 JASPAR yes 100830889
chr6 25170273 25170288 STAT2 JASPAR yes 70336617
chr6 25170273 25170288 STAT2 JASPAR yes 100830890
chr6 25170274 25170295 IRF1 JASPAR yes 70336618
chr6 25170274 25170295 IRF1 JASPAR yes 100830891
chr6 25170276 25170291 FOXP1 JASPAR yes 70336619
chr6 25170276 25170291 FOXP1 JASPAR yes 100830892
Genes associated with rs542854080[chr6:25170277], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More