EnhancerDB
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  3. rs542952880[chr1:41269541]
Enhancers that have rs542952880[chr1:41269541]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41258745 41277518 enh278
Bone Marrow (K562) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Muscle (A673) Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs542952880[chr1:41269541]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41269522 41269542 RREB1 JASPAR yes 28344955
chr1 41269527 41269541 ZIC1 JASPAR yes 28344956
chr1 41269527 41269542 ZIC3 JASPAR yes 28344957
chr1 41269527 41269542 ZIC4 JASPAR yes 28344958
chr1 41269533 41269552 REST JASPAR yes 28344959
chr1 41269534 41269548 GLIS2 JASPAR yes 28344960
chr1 41269537 41269547 SP1 JASPAR yes 28344961
chr1 41269539 41269544 SP1 TRANSFAC yes 28344962
Genes associated with rs542952880[chr1:41269541], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More