EnhancerDB
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  3. rs543050685[chr19:13279061]
Enhancers that have rs543050685[chr19:13279061]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13265805 13289518 enh17931
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs543050685[chr19:13279061]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13277766 13279253 ZNF274 GTRD no Cervix (HeLa-S3) 21851206
chr19 13277766 13279253 ZNF274 GTRD no Cervix (HeLa-S3) 108389537
chr19 13278401 13279061 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21851315
chr19 13278401 13279061 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108389657
chr19 13278420 13279090 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108389668
chr19 13278645 13279101 ZNF274 GTRD no Bone Marrow (K562) 21851369
chr19 13278645 13279101 ZNF274 GTRD no Bone Marrow (K562) 108389717
chr19 13278742 13279140 ZNF274 GTRD no Bone Marrow (K562) 21851371
chr19 13278742 13279140 ZNF274 GTRD no Bone Marrow (K562) 108389719
chr19 13279059 13279078 PAX5 JASPAR yes 112515071
Genes associated with rs543050685[chr19:13279061], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More