EnhancerDB
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  3. rs543147213[chr1:225941966]
Enhancers that have rs543147213[chr1:225941966]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs543147213[chr1:225941966]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225940873 225942011 SOX2 GTRD no Neural Stem Cells (H9) 21385731
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225941073 225941975 SOX2 GTRD no Neural Stem Cells (H9) 21385735
chr1 225941511 225942151 ZNF274 GTRD no Liver (HepG2) 21385740
chr1 225941550 225942166 ZNF274 GTRD no Liver (HepG2) 21385741
chr1 225941556 225942124 ZNF274 GTRD no Cervix (HeLa-S3) 21385742
chr1 225941569 225942044 SOX2 GTRD no Neural Stem Cells (H9) 21385743
chr1 225941579 225942127 SOX2 GTRD no Neural Stem Cells (H9) 21385744
chr1 225941588 225941974 SOX2 GTRD no Neural Stem Cells (H9) 21385745
chr1 225941954 225941969 FOXA1 JASPAR yes 35767518
chr1 225941955 225941967 FOXI1 JASPAR yes 35767519
chr1 225941955 225941970 FOXP1 JASPAR yes 35767520
chr1 225941956 225941967 FOXP2 JASPAR yes 35767521
chr1 225941956 225941968 FOXC2 JASPAR yes 35767522
chr1 225941957 225941968 FOXB1 JASPAR yes 35767525
chr1 225941957 225941968 FOXC1 JASPAR yes 35767526
chr1 225941958 225941969 FOXA1 JASPAR yes 35767527
chr1 225941965 225941985 PPARG JASPAR yes 35767528
Genes associated with rs543147213[chr1:225941966], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More