EnhancerDB
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  3. rs543313428[chr1:28749958]
Enhancers that have rs543313428[chr1:28749958]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28732865 28757735 enh186
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs543313428[chr1:28749958]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28749948 28749963 HNF1A JASPAR yes 27769591
chr1 28749949 28749962 HNF1B JASPAR yes 27769592
chr1 28749950 28749961 BATF JASPAR yes 27769593
chr1 28749950 28749964 SPIC JASPAR yes 27769594
chr1 28749952 28749967 FOXP1 JASPAR yes 27769595
chr1 28749953 28749964 FOXA1 JASPAR yes 27769596
chr1 28749953 28749968 FOXA1 JASPAR yes 27769597
chr1 28749954 28749960 JUN TRANSFAC yes 27769598
chr1 28749954 28749965 FOXB1 JASPAR yes 27769599
chr1 28749954 28749965 FOXC1 JASPAR yes 27769600
chr1 28749954 28749966 FOXC2 JASPAR yes 27769601
chr1 28749958 28749969 FOXB1 JASPAR yes 27769602
chr1 28749958 28749969 FOXC1 JASPAR yes 27769603
chr1 28749958 28749970 FOXC2 JASPAR yes 27769604
Genes associated with rs543313428[chr1:28749958], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More