EnhancerDB
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  3. rs543403538[chr1:225641996]
Enhancers that have rs543403538[chr1:225641996]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs543403538[chr1:225641996]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225641508 225642117 TCF7L2 GTRD no Colon (HCT116) 21384750
chr1 225641783 225642253 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21384751
chr1 225641816 225642386 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21384752
chr1 225641834 225642338 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21384753
chr1 225641881 225642277 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21384754
chr1 225641922 225642262 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21384755
chr1 225641925 225642255 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21384756
chr1 225641932 225642208 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21384757
chr1 225641940 225642136 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21384758
chr1 225641976 225642200 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21384759
chr1 225641993 225642180 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21384760
Genes associated with rs543403538[chr1:225641996], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More