EnhancerDB
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  3. rs543562647[chr12:52618269]
Enhancers that have rs543562647[chr12:52618269]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr12 52617951 52618303 vista13468
VISTA
Transcript factors that have rs543562647[chr12:52618269]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52618063 52618638 ZNF143 GTRD no Epithelial (MCF-7) 21546893
chr12 52618063 52618638 ZNF143 GTRD no Epithelial (MCF-7) 108033765
chr12 52618192 52618652 TCF7L2 GTRD no Colon (HCT116) 21546894
chr12 52618192 52618652 TCF7L2 GTRD no Colon (HCT116) 108033766
chr12 52618254 52618270 POU4F3 JASPAR yes 82406862
chr12 52618254 52618270 POU4F3 JASPAR yes 120930515
chr12 52618256 52618270 POU4F1 JASPAR yes 82406863
chr12 52618256 52618270 POU4F1 JASPAR yes 120930516
chr12 52618257 52618271 POU4F1 JASPAR yes 82406864
chr12 52618257 52618271 POU4F1 JASPAR yes 120930517
chr12 52618257 52618273 POU4F2 JASPAR yes 82406865
chr12 52618257 52618273 POU4F3 JASPAR yes 82406866
chr12 52618257 52618273 POU4F2 JASPAR yes 120930518
chr12 52618257 52618273 POU4F3 JASPAR yes 120930519
chr12 52618260 52618271 FOS JASPAR yes 82406867
chr12 52618260 52618271 FOS JASPAR yes 120930520
chr12 52618261 52618270 JDP2 JASPAR yes 82406868
chr12 52618261 52618270 JDP2 JASPAR yes 120930521
Genes associated with rs543562647[chr12:52618269], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More