EnhancerDB
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  3. rs543564552[chr19:13280056]
Enhancers that have rs543564552[chr19:13280056]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13265805 13289518 enh17931
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs543564552[chr19:13280056]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13280050 13280071 IRF1 JASPAR yes 112515221
chr19 13280052 13280067 PRDM1 JASPAR yes 112515222
chr19 13280052 13280067 STAT2 JASPAR yes 112515223
chr19 13280055 13280070 FOXP1 JASPAR yes 112515224
chr19 13280056 13280071 FOXP1 JASPAR yes 112515225
Genes associated with rs543564552[chr19:13280056], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More