EnhancerDB
  1. Home
  2. SNP
  3. rs543617899[chr18:56210256]
Enhancers that have rs543617899[chr18:56210256]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 56204885 56211735 enh4869
Liver Astrocyte Blood (Karpas-422) Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs543617899[chr18:56210256]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 56210251 56210261 GSC2 JASPAR yes 110957169
chr18 56210251 56210261 GSC JASPAR yes 110957170
chr18 56210252 56210260 OTX1 JASPAR yes 110957171
chr18 56210252 56210260 OTX2 JASPAR yes 110957172
chr18 56210252 56210260 RHOXF1 JASPAR yes 110957173
chr18 56210252 56210261 PITX3 JASPAR yes 110957174
chr18 56210255 56210264 PITX3 JASPAR yes 110957175
chr18 56210256 56210264 RHOXF1 JASPAR yes 110957176
Genes associated with rs543617899[chr18:56210256], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More