EnhancerDB
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  3. rs543828572[chr17:55976522]
Enhancers that have rs543828572[chr17:55976522]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55962618 55979623 enh17245
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Colon (HCT116) Uterus Thyroid Adrenal Muscle (Myoblast) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs543828572[chr17:55976522]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55976129 55976729 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274691
chr17 55976161 55976681 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274692
chr17 55976255 55976565 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274693
chr17 55976264 55976600 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274694
chr17 55976264 55976640 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274695
chr17 55976274 55976835 ZNF143 GTRD no Epithelial (MCF-7) 108274696
chr17 55976288 55976578 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274697
chr17 55976298 55976654 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21773831
chr17 55976298 55976654 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108274698
chr17 55976303 55976647 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274699
chr17 55976335 55976595 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274700
Genes associated with rs543828572[chr17:55976522], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More