EnhancerDB
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  3. rs543919516[chr1:204289007]
Enhancers that have rs543919516[chr1:204289007]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204280925 204295275 enh12578
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs543919516[chr1:204289007]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 21370372
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 107859825
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 21370373
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 107859826
chr1 204288972 204289894 ZNF274 GTRD no Bone Marrow (K562) 21370374
chr1 204288972 204289894 ZNF274 GTRD no Bone Marrow (K562) 107859827
chr1 204288986 204289007 ZNF263 JASPAR yes 34692177
chr1 204288987 204289008 ZNF263 JASPAR yes 34692178
chr1 204288989 204289010 ZNF263 JASPAR yes 34692179
chr1 204288992 204289013 ZNF263 JASPAR yes 34692180
chr1 204288996 204289017 ZNF263 JASPAR yes 34692184
chr1 204288998 204289009 E2F6 JASPAR yes 34692186
chr1 204289000 204289013 ELF1 JASPAR yes 34692187
chr1 204289000 204289021 ZNF263 JASPAR yes 34692188
chr1 204289003 204289009 PEA3 TRANSFAC yes 34692189
chr1 204289003 204289024 ZNF263 JASPAR yes 34692190
Genes associated with rs543919516[chr1:204289007], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More