EnhancerDB
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  3. rs543952976[chr19:6112048]
Enhancers that have rs543952976[chr19:6112048]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 6084063 6113078 enh17886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs543952976[chr19:6112048]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 6110815 6112132 TCF7L2 GTRD no Colon (HCT116) 21844747
chr19 6110815 6112132 TCF7L2 GTRD no Colon (HCT116) 108377381
chr19 6110930 6112052 TCF7L2 GTRD no Colon (HCT116) 21844748
chr19 6110930 6112052 TCF7L2 GTRD no Colon (HCT116) 108377382
chr19 6111227 6112129 ZNF274 GTRD no Bone Marrow (K562) 21844749
chr19 6111227 6112129 ZNF274 GTRD no Bone Marrow (K562) 108377383
chr19 6111301 6112064 ZNF274 GTRD no Bone Marrow (K562) 21844776
chr19 6111301 6112064 ZNF274 GTRD no Bone Marrow (K562) 108377412
chr19 6111323 6112063 ZNF274 GTRD no Bone Marrow (K562) 21844786
chr19 6111323 6112063 ZNF274 GTRD no Bone Marrow (K562) 108377422
chr19 6112030 6112051 IRF1 JASPAR yes 112259038
chr19 6112036 6112051 FOXP1 JASPAR yes 112259043
chr19 6112036 6112057 IRF1 JASPAR yes 112259044
chr19 6112037 6112048 FOXP2 JASPAR yes 112259045
chr19 6112038 6112053 FOXP1 JASPAR yes 112259046
chr19 6112038 6112059 IRF1 JASPAR yes 112259047
chr19 6112042 6112063 IRF1 JASPAR yes 112259048
chr19 6112043 6112058 FOXP1 JASPAR yes 112259049
chr19 6112045 6112060 FOXP1 JASPAR yes 112259050
chr19 6112047 6112062 FOXP1 JASPAR yes 112259051
chr19 6112048 6112063 FOXP1 JASPAR yes 112259052
Genes associated with rs543952976[chr19:6112048], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More