EnhancerDB
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  3. rs543956182[chr1:209588441]
Enhancers that have rs543956182[chr1:209588441]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs543956182[chr1:209588441]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209585538 209588619 ZBTB33 GTRD no Brain (SK-N-SH) 107865749
chr1 209587177 209588554 ZNF274 GTRD no Cervix (HeLa-S3) 21375312
chr1 209587280 209589178 ZNF274 GTRD no Cervix (HeLa-S3) 21375313
chr1 209587324 209588492 ZNF143 GTRD no Epithelial (MCF-7) 21375314
chr1 209587378 209588443 ZNF143 GTRD no Epithelial (MCF-7) 21375317
chr1 209587399 209588527 ZNF143 GTRD no Epithelial (MCF-7) 21375318
chr1 209587432 209588804 AR GTRD no Prostate (PC-3) 21375321
chr1 209587433 209588554 ZNF274 GTRD no Cervix (HeLa-S3) 21375322
chr1 209587567 209588483 ZNF274 GTRD no Cervix (HeLa-S3) 21375337
chr1 209587607 209588498 ZBTB33 GTRD no Lung (A549) 21375343
chr1 209587648 209588533 ZNF274 GTRD no Cervix (HeLa-S3) 21375348
chr1 209587730 209588596 ZNF274 GTRD no Cervix (HeLa-S3) 21375359
chr1 209587798 209588549 ZNF274 GTRD no Cervix (HeLa-S3) 21375367
chr1 209588329 209589428 ZNF274 GTRD no Cervix (HeLa-S3) 21375371
chr1 209588329 209589428 ZNF274 GTRD no Cervix (HeLa-S3) 107865764
chr1 209588439 209588447 MEIS3 JASPAR yes 34973620
chr1 209588440 209588444 NFE TRANSFAC yes 34973621
chr1 209588441 209588452 USF1 JASPAR yes 34973622
chr1 209588441 209588452 USF2 JASPAR yes 34973623
Genes associated with rs543956182[chr1:209588441], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More